Curriculum Vitae
Qi Ouyang
EDUCATION
University of Pennsylvania, Philadelphia, PA
M.S. in Chemical Science (Concentration: Biological Chemistry); May 2019
University of Illinois Urbana-Champaign, Urbana, IL
B.S. in Chemistry, High Distinction, May 2017
RESEARCH EXPERIENCES
Biophysics Senior Research Scientist
Aug 2019 - Present
DNA-encoded Library Department, GlaxoSmithKline (GSK), Cambridge, MA
Goal: Identify and validate hit molecules from DNA-encoded library and machine learning-predicted binders
● Design high-throughput mass spectrometry-based binding assays to build a machine learning model for DNA-encoded library binding prediction, and test over 1,000 compounds annually
● Evaluate binding affinity of E3 ligase ligands for proteolysis-targeting chimera (PROTAC) development
● Identify optimal buffer conditions to monitor protein stability that minimize protein precipitation
● Generate and analyze large mass spectrometry datasets to help develop automated data processing software
● Led a team of three people to organize the first GSK Scientific Flash Talk, which attracted >100 participants globally
Structural Biophysics Co-op Intern
May 2018 - Dec 2018
Biophysics and Protein Structural Science Department, GlaxoSmithKline, Philadelphia, PA
Master Thesis: Understanding the Relationship between Human Kinase and Antibody Binding
● Identified and characterized the binding of a human kinase and its corresponding antigen to guide the structure-based vaccine antigen design
● Designed and optimized crystallization conditions for antibody-protein complexes
● Monitored and visualized protein dynamics by color-mapping hydrogen-deuterium exchange (HDX) peptide-resolution data onto three-dimensional protein structures
● Developed and optimized antibody digestion protocol to produce functional antigen-binding fragments (Fab)
Graduate Researcher
Jan 2018 - May 2018
School of Medicine, University of Pennsylvania, Philadelphia, PA
Goal: Screening synergistic drug combinations and identifying optimal drug pairs for treating neurofibromatosis
● Developed and optimized cell-based high throughput screening assay for measuring synergistic and antagonistic effects for efficacy to guide the determination of various drug dosages
● Maintained and evaluated cancer cell lines proliferation using ATP concentration assays
● Identified dose-effect relationship by interpreting large scale screens data and using relevant computer software
Research Assistant
Feb 2016 - May 2017
Leckband Lab, University of Illinois Urbana-Champaign, Urbana, IL
Undergraduate Thesis: Immobilization of Fluorescently-labeled Phosphoglycerate Kinase (PGK-FRET) at Self-assembled Monolayer Surfaces (SAMs)
● Assembled and launched a linear stage system to produce hydrophobic and hydrophilic SAMs for contact angle measurement to study surface properties
● Measured protein binding kinetics on hydrophobic and hydrophilic surfaces with surface plasmon resonance (SPR)
● Analyzed extensive real-time SPR data for kinetic analysis, equilibrium analysis, and concentration analysis
Research Assistant
May 2014 - Aug 2014
Hong lab, Michigan State University, East Lansing, MI
Goal: Expressing and purifying ATP-dependent zinc metalloprotease FtsH in E. coli to support Alzheimer’s research
● Grew colony and performed induction of protein in large scale cultures
● Performed cell lysis, protein extraction, and protein purification
● Organized lab equipment and maintained a clean working environment to ensure lab safety and work efficiency
● Participated in weekly group meetings with the PI and five graduate students to discuss and solve problems
LEADERSHIP & TEACHING EXPERIENCES
Healthcare Consultant
Sep 2018 - May 2019
Penn Biotech Group, University of Pennsylvania, Philadelphia, PA
● Proposed a competition-based pricing strategy for a drug candidate that has gained FDA fast track designation
● Optimized the time and cost of managing drug supplies in clinical trials by conducting market research for a late-stage biopharmaceutical company
● Investigated competitive landscape for similar drug candidates using Wharton databases and literature searches
● Collaborated with five colleagues across various MBA, Ph.D., and Master’s programs to propose a pricing strategy
Director of Finance
Aug 2018 - May 2019
LPS Student Government, University of Pennsylvania, Philadelphia, PA
● Managed the Student Finance Department; maintained cash flow statements and ensured that financial reporting was done in full compliance with student government’s regulations
● Established open communications with VPs of Communications, Social, and Policy to ensure students across all departments were served
Teaching Assistant
Aug 2016 - Dec 2016
Department of Chemistry, University of Illinois Urbana-Champaign, Urbana, IL
● Led weekly lab sessions and group discussions for 28 undergraduate students
● Met with students one-on-one to answer questions and explain key concepts for >50 hours per semester
● Prepared and organized reagents for lab experiments
● Created and updated course materials, such as syllabus, visual aids, answer keys, supplementary notes, and course websites
TECHNICAL SKILLS
Laboratory: Surface Plasmon Resonance (SPR), Microscale Thermophoresis (MST), X-ray crystallography, Hydrogen Deuterium Exchange (HDX), Affinity Selection Mass Spectrometry, Thermal Shift Assay (TSA), Dynamic Light Scattering (DLS), Protein purification, Liquid Chromatography-Mass Spectrometry (LC-MS), High-performance LC, High-throughput Screening, Cell culture, Gel electrophoresis, NMR Spectroscopy, Multiangle Light Scattering
Computer: BLAST, PyMOL, Spotfire, ChemDraw, MOE, Python